PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00314g00047.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-X1
Protein Properties Length: 1041aa    MW: 112381 Da    PI: 8.2358
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00314g00047.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.91.4e-05243260118
                  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                               CG+H+C+++CH GpC+ C
  Peaxi162Scf00314g00047.1 243 CGRHRCEQTCHVGPCGHC 260
                               ****************99 PP

2zf-NF-X117.49.9e-06365382118
                  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                               CG H Cq+ CH+G+C pC
  Peaxi162Scf00314g00047.1 365 CGVHHCQAVCHTGDCAPC 382
                               ****************** PP

3zf-NF-X118.73.8e-06461479119
                  zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                               CG+H+C++lCH G CppC 
  Peaxi162Scf00314g00047.1 461 CGQHSCESLCHSGHCPPCL 479
                               ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.48E-6148219No hitNo description
PROSITE profilePS500168.76157218IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590160215IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.48160216IPR001841Zinc finger, RING-type
CDDcd060083.38E-12233281No hitNo description
SMARTSM004380.03243262IPR000967Zinc finger, NF-X1-type
PfamPF014227.8E-4243260IPR000967Zinc finger, NF-X1-type
CDDcd060083.18E-8297350No hitNo description
SMARTSM004380.0028307326IPR000967Zinc finger, NF-X1-type
PfamPF014220.0096307324IPR000967Zinc finger, NF-X1-type
CDDcd060081.58E-13355403No hitNo description
SMARTSM004386.6E-4365384IPR000967Zinc finger, NF-X1-type
PfamPF014221.3E-4365382IPR000967Zinc finger, NF-X1-type
SMARTSM00438190423457IPR000967Zinc finger, NF-X1-type
PfamPF0142217423434IPR000967Zinc finger, NF-X1-type
CDDcd060081.90E-9451503No hitNo description
SMARTSM004382.0E-4461480IPR000967Zinc finger, NF-X1-type
PfamPF014229.2E-5461478IPR000967Zinc finger, NF-X1-type
CDDcd060084.70E-5508556No hitNo description
SMARTSM004380.34518536IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16571601IPR000967Zinc finger, NF-X1-type
PfamPF014228.7E-4571586IPR000967Zinc finger, NF-X1-type
CDDcd060083.39E-5599648No hitNo description
PfamPF014224.1603629IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021610631IPR000967Zinc finger, NF-X1-type
PfamPF014242.8E-4738803IPR001374R3H domain
Gene3DG3DSA:3.30.70.3303.1E-4852896IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MSFSGQNNRR NNNNNNNHRP RNNNNPVWVP RGSSTAAPTT TTTVSPAPVA TVTGTVVVSP  60
RFGHNGSSSA ENGGNKDNVS VAAPVSRHQT YAEFKQNRVP YGNQRRERGG RGRENYNYQE  120
NKGERVVNQG ESRRLKEKDS NLPQLVQEIQ EKLLKGNIEC MICYDMVRRS APVWSCSSCY  180
SIFHLNCIKK WARAPTSVDT SLEKNQGFNW RCPGCQSVQL TSSKEIRKSV LTCGQQCGKL  240
LDCGRHRCEQ TCHVGPCGHC EIIVNAYCFC KKKTEAVLCG DMGVKGDIKM EDGVFSCNSA  300
CGNRLSCGNH VCHEICHPGP CGDCALLPSK VKTCCCGKTS LAEKRHSCLD PIPTCSKTCG  360
KSLRCGVHHC QAVCHTGDCA PCLVPVTQRC RCGSTSRTVE CYRTQAEDDK FTCDRPCGQK  420
KNCGRHRCSE RCCPLSNPKN SVTGGWNPHF CSMPCEKKLR CGQHSCESLC HSGHCPPCLE  480
TIFTDLTCAC GRTSIPPPLP CGTPHPSCQL PCSVPQPCGH PPTHSCHFGD CLPCAVPIAK  540
ECVGGHVILR NIPCGSKDIR CNKLCGKTRQ CGLHACARTC HPSPCDISAG PSNGSRASCG  600
QTCGAPRRDC RHTCTALCHP SSPCPDVRCE FPVTITCSCG RITANVPCDA GGPIIDSVFE  660
ASIIQKLPSS LQPIETNGKK VPLGQRKLIC DDECAKMEKK KVLSDAFGIT TPNLEALHFG  720
ENAAVSEVLG DLLRRDPKWV LSIEERCKYL VLGRSRGGVS ALKVHVFCPM LKEKRDAVRL  780
IAARWKLSVN AAGWEPKRFV VVHVTPKSKA PARILGAKGC TISNIAQPAV FDSLVDMDPR  840
LVVALFDLPR DGDISALVLR FGGECELVWL NDKNALAVFS DPARAATAMR RLDQGSAYYG  900
AAVVPQSGVA SAVSSTSNVW GVSGATKDGG GTSALKSNPW KKAVVQEPHL RDNPWDAEEW  960
SKNPTDSAPS AGKGNEGPVA SSSNRWSILE PGMTSDLSKA SSTVKEPVIE PVGGSVLPPK  1020
PQEVGVDEMA DVVDDWENAC D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384620.0AC238462.1 Solanum lycopersicum chromosome 3 clone C03HBa0203H10, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767499.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
RefseqXP_016451170.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM1B4730.0M1B473_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1